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2015 2014 2013 2012 2011 2010
序号 研究组长 论文题目 全部作者 刊物名称 卷期页 年份
1 李亦学 Genome sequences of wild and domestic Bactrian camels Jirimutu, Zhen Wang, Guohui Ding, Gangliang Chen, Yamin Sun, Zhihong Sun, Heping Zhang,
Lei Wang, Surong Hasi, Yan Zhang, Jianmei Li, Yixiang Shi, Ze Xu, Chuan He, Siriguleng Yu,
Shengdi Li, Wenbin Zhang, Mijiddorj Batmunkh, Batsukh Ts, Narenbatu, Unierhu, Shirzana Bat-Ireedui, Hongwei Gao, Banzragch Baysgalan, Qing Li, Zhiling Jia, Turigenbayila, Subudenggerile,Narenmanduhu, Zhaoxia Wang, Juan Wang, Lei Pan, Yongcan Chen, Yaichil Ganerdene, Dabxilt, Erdemt, Altansha, Altansukh, Tuya Liu, Minhui Cao, Aruuntsever, Bayart, Hosblig, Fei He,A Zha-ti, Guangyong Zheng, Feng Qiu, Zikui Sun, Lele Zhao, Wenjing Zhao, Baohong Liu, Chao Li,Yunqin Chen, Xiaoyan Tang, Chunyan Guo, Wei Liu, Liang Ming, Temuulen, Aiying Cui, Yi Li, Junhui Gao,Jing Li, Wurentaodi, Shen Niu, Tao Sun, Zhengxiao Zhai, Min Zhang, Chen Chen, Tunteg Baldan,Tuman Bayaer, Yixue Li*, He Meng
Nat Commun 3:1202 2012
2 陈洛南 Reconstructing dynamic gene regulatory networks from sample-based transcriptional data ?Hailong Zhu, R. Shyama Prasad Rao, Jiming Liu, Tao Zeng, Luonan Chen Nucl. Acids Res 1-11,应为40(21): 10657-10667 2012
3 李亦学 dbDEPC 2.0: updated database of differentially expressed proteins in human cancers. Ying He, Menghuan Zhang, Yuanhu Ju, Zhonghao Yu, Daqing Lv, Han Sun,
Weilan Yuan, Fei He, Jianshe Zhang, Hong Li, Jing Li, Rui Wang-Sattler,
Yixue Li, Guoqing Zhang* and Lu Xie*
Nucl. Acids Res 40:D964-71 2012
4 吴家睿 Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis Wei Song, Jiguang Wang, Ying Yang, Naihe Jing, Xiangsun Zhang, Luonan Chen* and Jiarui Wu*? J Mol Cell Biol 4(4):197-206 2012
5 曾嵘 ?Shotgun and targeted proteomics reveal that pre-surgery serum levels of LRG1, SAA, and C4BP may refine prognosis of resected squamous cell lung cancer.? Yansheng Liu, Xiaoyang Luo, Qingrun Li, Hong Li, Chen Li, Hong Ni, Rongxia Li, Rui Wang, Haichuan Hu, Yunjian Pan, Haiquan Chen* and Rong Zeng* ?J Mol Cell Biol. 4(5):344-347 2012
6 陈洛南 Coexpression network analysis in chronic hepatitis B and C hepatic lesion reveals distinct patterns of disease progression to hepatocellular carcinoma Danning He, Zhiping Liu*, Masao Honda, Shuichi Kaneko and Luonan Chen* ?J Mol Cell Biol. 4(3):140-152 2012
7 李亦学 A novel strategy for deciphering dynamic conservation of gene expression relationship Yuan LY, Ding GH, Chen YE, Chen Z*, & Li YX* J Mol Cell Biol  4(3):177-9 2012
8 陈洛南 Inferring gene regulatory networks from gene expression data by PC-algorithm based on conditional mutual information Xiujun Zhang, Xingming Zhao, Kun He, Le Lu, Yongwei Cao, Jingdong Liu, Jin-Kao Hao, Zhiping Liu, Luonan Chen Bioinformatics 28(1):98-104 2012
9 曾嵘 Quantitative Proteomics Revealed Up-regulated Protein Expression of SET Complex Associated with Hepatocellular Carcinoma. Chen Li , Hong-Qiang Ruan , Yansheng Liu, Mengjie Xu , Jie Dai , Quanhu Sheng , Yexiong Tan , Zhenzhen Yao, Hong-Yang Wang , Jiarui Wu and Rong Zeng * ?J Proteome Res? 11(2):871-885 2012
10 曾嵘 ?Secretome-Derived Isotope Tags (SDIT) Reveal Adipocyte-Derived Apolipoprotein C-I as a Predictive Marker for Cardiovascular Disease Rongxia Li, Yubo Ding, Shilin Zhao , Yuanyuan Xiao , Qingrun Li , Fangying Xia,Liang Sun, Xu Lin, Jiarui Wu, Kan Liao * and Rong Zeng * J Proteome Res.? 11(5):2851-2862 2012
11 曾嵘 ?BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics.? Quanhu Sheng, Jie Dai, Yibo Wu, Haixu Tang and Rong Zeng* ?J Proteome Res. 11(3):1494-1502 2012
12 曾嵘 ?Delicate analysis of post-translational modifications on Dishevelled 3.? Chaochao Wu, Wei Wei, Chen Li, Qingrun Li, Quanhu Sheng and Rong Zeng* J Proteome Res. 11(7):3829-3837 2012
13 陈洛南 Identifying responsive modules by mathematical programming: an application to budding yeast cell cycle Zhenshu Wen, Zhiping Liu, Yiqing Yan, Guanying Piao, Zhengrong Liu, Jiarui Wu* and Luonan Chen* PLoS One 7(7):e41854 2012
14 刘雷 Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network Biqing Li, Tao Huang, Lei Liu*, Yudong Cai* and Kuochen Chou* PLoS One 7(4):e33393 2012
15 李亦学 Towards biological characters of interactions between transcription factors and their DNA targets in mammals Guangyong Zheng*, Qi Liu, Guohui Ding, Chaochun Wei* and Yixue Li* BMC genomics 13:388 2012
16 李亦学,孙红 Evolutionary relationships between miRNA genes and their activity Yan Zhu, Geir Skogerb?, Qianqian Ning, Zhen Wang, Biqing Li, Shuang Yang, Hong Sun* and Yixue Li* BMC Genomics 13:718 2012
17 李亦学 Detecting the borders between coding and noncoding
DNA regions in prokaryotes based on
recursive segmentation and nucleotide doublets
statistics
Suping Deng, Yixiang Shi, Liyun Yuan, Yixue Li, Guohui Ding BMC Genomics 13:S19 2012
18 陈洛南 Identifying disease genes and module biomarkers with differential interactions Xiaoping Liu, Zhiping Liu, Xingming Zhao, Luonan Chen J Am Med Inform Assoc 19:241-248 2012
19 陈洛南、张焱 Detecting thermophilic proteins through selecting amino acid and dipeptide composition features Songyot Nakariyakul , Zhiping Liu, Luonan Chen* Amino Acids 42(5):1947-1953 2012
20 李亦学 Prediction of lysine ubiquitination with mRMR feature selection and analysis Yudong Cai* , Tao Huang ,? Lele Hu,? Xiaohe Shi , Lu Xie and Yixue Li* Amino Acids 42(4):1387-1395 2012
21 张焱 In silico identification of a multi-functional regulatory protein involved in Holliday junction resolution in bacteria. Yan Zhang*, Jie Lin and Yang Gao BMC Syst. Biol. Suppl 1:S20 2012
22 李亦学 Combinatorial network of transcriptional regulation and microRNA regulation in human cancer Hui Yu, Kang Tu, Yijie Wang, Junzhe Mao, Lu Xie*, Yuanyuan Li* and Yixue Li* BMC systems biology 6:61 2012
23 陈洛南 Tracing dynamic biological processes during phase transition Tao Zeng and Luonan Chen* BMC Systems Biology Suppl 1:S12 2012
24 陈洛南 A computational procedure for identifying master regulator candidates for diabetes progression in Goto-Kakizaki rat Guanyin Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu2, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto BMC Syst Biol 6(Suppl 1):S2 2012
25 陈洛南 Modelling biological systems from molecules to dynamical networks Yong Wang, Xiang-Sun Zhang, and Luonan Chen BMC Syst Biol 6(Suppl 1):S1 2012
26 李亦学 Characterizing criticality of proteins by systems dynamics: Escherichia coli central carbon metabolism as a working example Ru-Dong Li, Lei Liu* BMC Syst Biol 6:S11 2012
27 李亦学 SySAP: a System-level predictor of deleterious Single Amino acid Polymorphisms Huang T, Wang C, Zhang G, Xie L, Li Y* Protein cell 3,38-43 2012
28 李亦学 Prediction of functional phosphorylation sites by incorporating evolutionary information Niu S, Wang Z, Ge D, Zhang G*, Li Y*. Protein cell 3(9): 675–90 2012
29 曾嵘 Complementary workflow for global phosphoproteomeanalysis. Qingrun Li,Zhibin Ning, Xinglin Yang, Jiarui Wu and Rong Zeng* Electrophoresis 33:3291? 2012
30 陈洛南 Prediction of hot spots in protein interfaces using a random forest model with hybrid features Lin Wang, Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen Protein Eng Des Sel 25(3): 119-126 2012
31 陈洛南 ?Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers ?Luonan Chen, Rui Liu, Zhiping Liu, Meiyi Li, Kazuyuki Aihara Sci Rep 2:342 2012
32 陈洛南 Identifying critical transitions and their leading networks in complex diseases Rui Liu, Meiyi Li, Zhi-Ping Liu, Jiarui Wu, Luonan Chen, Kazuyuki Aihara Sci Rep 2:813 2012
33 陈洛南 Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs Zhiping Liu*, Jiguang Wang, Yuqing Qiu, Ross KK Leung, Xiangsun Zhang, Stephen KW Tsui and Luonan Chen* BMC Bioinformatics Suppl 7:S6 2012
34 陈洛南 ?Identifying dysregulated pathways in cancers from pathway interaction networks Ke-Qin Liu, Zhi-Ping Liu, Jin-Kao Hao, Luonan Chen, Xing-Ming Zhao BMC Bioinformatics ?13:126 2012
35 陈洛南 Community structure detection based on Potts model and network’s spectral characterization. Hui-Jia Li, Yong Wang, Ling-Yun Wu, Zhi-Ping Liu, Luo-Nan Chen and Xiang-Sun Zhang Europhysics Letters ?97 (48005) 2012
36 李亦学 Selection of reprogramming factors of induced pluripotent stem cells based on the protein interaction network and functional profiless Huang T, Cai YD, Chen L, Hu L, Kong XY, Li YX, Chou KC Protein Pept Lett 19(1):113-9 2012
37 陈洛南 Identify overlapping communities in social networks using multi-scale local information expansion ?H.J. Li, J.H. Zhang, Z.P. Liu, L. Chen, X.S. Zhang The European Physical Journal B ?85: 190 2012
38 陈洛南 Network-based analysis of complex diseases Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang and Luonan Chen ?IET Systems Biology 6,22-33 2012
   
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